Search results for "Markov chain [Monte Carlo]"
showing 10 items of 87 documents
Accounting for preferential sampling in species distribution models
2019
D. C., A. L. Q. and F. M. would like to thank the Ministerio de Educación y Ciencia (Spain) for financial support (jointly financed by the European Regional Development Fund) via Research Grants MTM2013‐42323‐P and MTM2016‐77501‐P, and ACOMP/2015/202 from Generalitat Valenciana (Spain). Species distribution models (SDMs) are now being widely used in ecology for management and conservation purposes across terrestrial, freshwater, and marine realms. The increasing interest in SDMs has drawn the attention of ecologists to spatial models and, in particular, to geostatistical models, which are used to associate observations of species occurrence or abundance with environmental covariates in a fi…
Hierarchical log Gaussian Cox process for regeneration in uneven-aged forests
2021
We propose a hierarchical log Gaussian Cox process (LGCP) for point patterns, where a set of points x affects another set of points y but not vice versa. We use the model to investigate the effect of large trees to the locations of seedlings. In the model, every point in x has a parametric influence kernel or signal, which together form an influence field. Conditionally on the parameters, the influence field acts as a spatial covariate in the intensity of the model, and the intensity itself is a non-linear function of the parameters. Points outside the observation window may affect the influence field inside the window. We propose an edge correction to account for this missing data. The par…
On the stability of some controlled Markov chains and its applications to stochastic approximation with Markovian dynamic
2015
We develop a practical approach to establish the stability, that is, the recurrence in a given set, of a large class of controlled Markov chains. These processes arise in various areas of applied science and encompass important numerical methods. We show in particular how individual Lyapunov functions and associated drift conditions for the parametrized family of Markov transition probabilities and the parameter update can be combined to form Lyapunov functions for the joint process, leading to the proof of the desired stability property. Of particular interest is the fact that the approach applies even in situations where the two components of the process present a time-scale separation, w…
Error estimation and reduction with cross correlations
2010
Besides the well-known effect of autocorrelations in time series of Monte Carlo simulation data resulting from the underlying Markov process, using the same data pool for computing various estimates entails additional cross correlations. This effect, if not properly taken into account, leads to systematically wrong error estimates for combined quantities. Using a straightforward recipe of data analysis employing the jackknife or similar resampling techniques, such problems can be avoided. In addition, a covariance analysis allows for the formulation of optimal estimators with often significantly reduced variance as compared to more conventional averages.
Dark coupling and gauge invariance
2010
We study a coupled dark energy–dark matter model in which the energymomentum exchange is proportional to the Hubble expansion rate. The inclusion of its perturbation is required by gauge invariance. We derive the linear perturbation equations for the gauge invariant energy density contrast and velocity of the coupled fluids, and we determine the initial conditions. The latter turn out to be adiabatic for dark energy, when assuming adiabatic initial conditions for all the standard fluids. We perform a full Monte Carlo Markov Chain likelihood analysis of the model, using WMAP 7-year data.
Recent Advances in Bayesian Inference in Cosmology and Astroparticle Physics Thanks to the MultiNest Algorithm
2012
We present a new algorithm, called MultiNest, which is a highly efficient alternative to traditional Markov Chain Monte Carlo (MCMC) sampling of posterior distributions. MultiNest is more efficient than MCMC, can deal with highly multi-modal likelihoods and returns the Bayesian evidence (or model likelihood, the prime quantity for Bayesian model comparison) together with posterior samples. It can thus be used as an all-around Bayesian inference engine. When appropriately tuned, it also provides an exploration of the profile likelihood that is competitive with what can be obtained with dedicated algorithms.
Retrieval of atmospheric CH4profiles from Fourier transform infrared data using dimension reduction and MCMC
2016
We introduce an inversion method that uses dimension reduction for the retrieval of atmospheric methane (CH4) profiles. Uncertainty analysis is performed using the Markov chain Monte Carlo (MCMC) statistical estimation. These techniques are used to retrieve CH4 profiles from the ground-based spectral measurements by the Fourier Transform Spectrometer (FTS) instrument at Sodankyla (67.4 degrees N, 26.6 degrees E), Northern Finland. The Sodankyla FTS is part of the Total Carbon Column Observing Network (TCCON), a global network that observes solar spectra in near-infrared wavelengths. The high spectral resolution of the data provides approximately 3 degrees of freedom about the vertical struc…
Bayesian dynamic modeling of time series of dengue disease case counts
2017
The aim of this study is to model the association between weekly time series of dengue case counts and meteorological variables, in a high-incidence city of Colombia, applying Bayesian hierarchical dynamic generalized linear models over the period January 2008 to August 2015. Additionally, we evaluate the model’s short-term performance for predicting dengue cases. The methodology shows dynamic Poisson log link models including constant or time-varying coefficients for the meteorological variables. Calendar effects were modeled using constant or first- or second-order random walk time-varying coefficients. The meteorological variables were modeled using constant coefficients and first-order …
On the Performance of Channel Assembling and Fragmentation in Cognitive Radio Networks
2014
[EN] Flexible channel allocation may be applied to multi-channel cognitive radio networks (CRNs) through either channel assembling (CA) or channel fragmentation (CF). While CA allows one secondary user (SU) occupy multiple channels when primary users (PUs) are absent, CF provides finer granularity for channel occupancy by allocating a portion of one channel to an SU flow. In this paper, we investigate the impact of CF together with CA for SU flows by proposing a channel access strategy which activates both CF and CA and correspondingly evaluating its performance. In addition, we also consider a novel scenario where CA is enabled for PU flows. The performance evaluation is conducted based on…
Convergence of Markov Chains
2020
We consider a Markov chain X with invariant distribution π and investigate conditions under which the distribution of X n converges to π as n→∞. Essentially it is necessary and sufficient that the state space of the chain cannot be decomposed into subspaces that the chain does not leave, or that are visited by the chain periodically; e.g., only for odd n or only for even n.